kallisto is a program for quantifying abundances of transcripts from RNA-Seq data.

• Latest Version: 0.43.0
• Added: March, 2016
• Updated: September, 2016
• Link: https://pachterlab.github.io/kallisto/

See which versions of kallisto are available:

$ module avail kallisto

Load kallisto

$ module load kallisto/0.42.4

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/pachterlab/kallisto/releases/download/v0.42.4/kallisto_linux-v0.42.4.tar.gz
$ tar -xvf kallisto_linux-v0.42.4.tar.gz
$ cd kallisto_linux-v0.42.4/
$ sudo mkdir -p /export/apps/kallisto/0.42.4
$ sudo cp -r . /export/apps/kallisto/0.42.4/