Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA

• Latest version: 2.2.3
• Added: March, 2015
• Updated: July, 2015
• Link: http://www.genome.umd.edu/jellyfish.html

See versions of jellyfish which are available:

$ module avail jellyfish

Load and run jellyfish:

$ module load jellyfish
$ jellyfish

Notes from the sysadmin during installation:

$ cd /tmp
$ wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz
$ tar -xvf jellyfish-2.2.0.tar.gz
$ cd jellyfish-2.2.0
$ sudo mkdir -p /export/apps/jellyfish/2.2.0
$ sudo chown joguya:joguya /export/apps/jellyfish/2.2.0
$ scl enable devtoolset-2 bash
$ ./configure CC=clang --prefix=/export/apps/jellyfish/2.2.0
$ make
$ make install
$ sudo chown root:root /export/apps/jellyfish/2.2.0