jellyfish-software
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| jellyfish-software [2015/07/28 12:16] – joguya | jellyfish-software [2020/10/28 09:19] – aorth | ||
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| ====== Jellyfish ====== | ====== Jellyfish ====== | ||
| - | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA | + | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. |
| ===== Information ===== | ===== Information ===== | ||
| - | * Latest version: 2.2.3 | + | * Latest version: 2.2.9 |
| * Added: March, 2015 | * Added: March, 2015 | ||
| - | * Updated: | + | * Updated: |
| - | * Link: http://www.genome.umd.edu/jellyfish.html | + | * Link: https://github.com/gmarcais/ |
| ===== Usage ===== | ===== Usage ===== | ||
| - | |||
| See versions of jellyfish which are available: | See versions of jellyfish which are available: | ||
| < | < | ||
| - | Load and run jellyfish: | + | Load one version of jellyfish into your environment |
| - | < | + | < |
| $ jellyfish</ | $ jellyfish</ | ||
| Line 22: | Line 21: | ||
| < | < | ||
| - | $ wget ftp://ftp.genome.umd.edu/pub/jellyfish/jellyfish-2.2.0.tar.gz | + | $ wget https://github.com/gmarcais/Jellyfish/releases/ |
| - | $ tar -xvf jellyfish-2.2.0.tar.gz | + | $ chmod +x jellyfish-linux |
| - | $ cd jellyfish-2.2.0 | + | $ sudo mkdir -p / |
| - | $ sudo mkdir -p / | + | $ sudo cp jellyfish-linux / |
| - | $ sudo chown joguya: | + | |
| - | $ scl enable devtoolset-2 bash | + | |
| - | $ ./configure CC=clang --prefix=/ | + | |
| - | $ make | + | |
| - | $ make install | + | |
| - | $ sudo chown root: | + | |
jellyfish-software.txt · Last modified: 2020/10/28 09:20 by aorth