ILRI Research Computing

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http://hpc.ilri.cgiar.org/iprscan/iprscan

From the readme, in addition to Bioperl, these packages must be installed on the head node and any compute nodes! Make sure they work!

1.1 Perl
The InterProScan package has been developed in Perl5 under UNIX and requires
that various perl modules be installed beforehand.  Please note that all these
modules are available via the CPAN website (http://search.cpan.org/)
  * DB_File.pm - the interface to Berkeley DB, which is a part of the standard Perl5 distribution.
  * XML::Parser.pm - libexpat (1.95.5 or newer) which is needed for the new implementation of
    BlastProDom and to parse xml outputs.
  * XML::Quote
  * English
  * File::Basename
  * File::Copy
  * File::Path
  * File::Spec::Functions
  * Sys::Hostname
  * Mail::Send
  * FileHandle
  * IO::Scalar
  * CGI
  * URI::Escape
  * IO::String

Here is a script you can use to test if these modules are working on a particular node:

#!/usr/bin/perl

use DB_File;
use XML::Parser;
use XML::Quote;
use English;
use File::Basename;
use File::Copy;
use File::Path;
use File::Spec::Functions;
use Sys::Hostname;
use Mail::Send;
use FileHandle;
use IO::Scalar;
use CGI;
use URI::Escape;
use IO::String;
use Bio::Perl;

exit;

Run it on a node like this:

$ rocks run host compute-0-16 'perl scripts/testperl.pl'

If it is successful you should not see any output.