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--- interproscan-software [2015/07/02 06:26] – created joguya
+++ interproscan-software [2017/08/24 06:19] – aorth
@@ Line 1: / Line 1: @@
 ====== Interproscan ======
+InterPro is a database which integrates together predictive information about proteins' function from a number of partner resources, giving an overview of the families that a protein belongs to and the domains and sites it contains.
 ===== Information =====
-  * Version: 5.13
+  * Version: 5.25-64.0
   * Added: July, 2015
-  * Updated: July, 2015
+  * Updated: August, 2017
-  * Link: https://code.google.com/p/interproscan/
+  * Link: https://github.com/ebi-pf-team/interproscan
 ===== Usage =====
-Scans a range of protein signatures against your sequence.
+Check for available versions:
 <code>$ module avail interproscan</code>
+Load the latest version into your environment:
+<code>$ module load interproscan/5.25-64.0</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-- requirements
+$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz
-$ module load python/2.7.8
+$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.25-64.0/interproscan-5.25-64.0-64-bit.tar.gz.md5
-$ module load perl
+$ md5sum -c interproscan-5.25-64.0-64-bit.tar.gz.md5
+$ tar -pxvzf interproscan-5.25-64.0-*-bit.tar.gz
-- install interproscan
+$ cd interproscan-5.25-64.0/data
-$ cd /tmp/
+$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-11.1.tar.gz
-$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz
+$ tar -pxvzf panther-data-11.1.tar.gz
-$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.13-52.0/interproscan-5.13-52.0-64-bit.tar.gz.md5
+$ sudo mkdir /export/apps/interproscan/5.25-64.0
-$ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5
+$ sudo cp -r * /export/apps/interproscan/5.25-64.0</code>
-$ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz
-- install Panther models
+Test:
-$ cd /tmp/interproscan-5.13-52.0/data
-$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz
-$ wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-9.0.tar.gz.md5
-$ md5sum -c panther-data-9.0.tar.gz.md5
-$ tar -xvf panther-data-9.0.tar.gz
-$ mkdir /export/apps/interproscan/5.13/
+<code>$ module load interproscan/5.25-64.0
-$ mv /tmp/interproscan-5.13-52.0/* /export/apps/interproscan/5.13/
+$ interproscan.sh -i /export/apps/interproscan/5.25-64.0/test_proteins.fasta -f tsv</code>
-- run tests
+**Note:** Interproscan 5.25-64.0 now ships components that depend on CentOS 7... so make sure you run it on compute03.
-$ interactive
-$ module load interproscan/5.13
-$ interproscan.sh -i /export/apps/interproscan/5.13/test_proteins.fasta -f tsv
-</code>