interproscan-software
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interproscan-software [2015/07/02 06:26] – created joguya | interproscan-software [2017/08/23 16:23] – aorth | ||
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====== Interproscan ====== | ====== Interproscan ====== | ||
+ | InterPro is a database which integrates together predictive information about proteins' | ||
Line 7: | Line 8: | ||
* Added: July, 2015 | * Added: July, 2015 | ||
* Updated: July, 2015 | * Updated: July, 2015 | ||
- | * Link: https://code.google.com/p/ | + | * Link: https://github.com/ebi-pf-team/ |
===== Usage ===== | ===== Usage ===== | ||
- | Scans a range of protein signatures against your sequence. | + | |
< | < | ||
Line 17: | Line 18: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | - requirements | + | $ wget ftp:// |
- | $ module load python/ | + | $ wget ftp:// |
- | $ module load perl | + | $ md5sum -c interproscan-5.25-64.0-64-bit.tar.gz.md5 |
- | + | $ tar -pxvzf interproscan-5.25-64.0-*-bit.tar.gz | |
- | - install interproscan | + | $ cd interproscan-5.25-64.0/ |
- | $ cd /tmp/ | + | $ wget ftp:// |
- | $ wget ftp:// | + | $ tar -pxvzf panther-data-11.1.tar.gz |
- | $ wget ftp:// | + | $ sudo mkdir / |
- | $ md5sum -c interproscan-5.13-52.0-64-bit.tar.gz.md5 | + | $ sudo cp -r * / |
- | $ tar -xvf interproscan-5.13-52.0-64-bit.tar.gz | + | |
- | - install Panther models | + | Test: |
- | $ cd / | + | |
- | $ wget ftp:// | + | |
- | $ wget ftp:// | + | |
- | $ md5sum -c panther-data-9.0.tar.gz.md5 | + | |
- | $ tar -xvf panther-data-9.0.tar.gz | + | |
- | $ mkdir / | + | < |
- | $ mv /tmp/interproscan-5.13-52.0/ | + | $ interproscan.sh -i / |
- | - run tests | + | **Note:** Interproscan |
- | $ interactive | + | |
- | $ module load interproscan/ | + | |
- | $ interproscan.sh | + | |
- | </ | + |
interproscan-software.txt · Last modified: 2019/05/28 07:43 by aorth