igblast-software
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Table of Contents
IgBLAST
IgBLAST was developed at NCBI to facilitate analysis of immunoglobulin variable domain sequences but has recently been extended to perform analysis for T cell receptor (TR) sequences.
Information
- Version: 1.10.0
- Added: September, 2016
- Updated: April, 2020
Usage
See which versions of igblast are available:
$ module avail igblast
Load one version into your environment and run it:
$ module load igblast/1.10.0 $ igblastn $ igblastp
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.10.0/ncbi-igblast-1.10.0-x64-linux.tar.gz $ tar xf ncbi-igblast-1.10.0-x64-linux.tar.gz $ sudo mkdir -p /export/apps/igblast/1.10.0 $ sudo mkdir -p /export/apps/igblast/1.10.0/data $ sudo cp -r ncbi-igblast-1.10.0/* /export/apps/igblast/1.10.0
Note: I did not install the databases as I am not sure we need them, as we are not using igblast directly right now. Otherwise, the documentation says we need them for versions less than 1.13.0.
igblast-software.1587034074.txt.gz · Last modified: 2020/04/16 10:47 by aorth