Differences

This shows you the differences between two versions of the page.

--- igblast-software [2020/04/16 10:06] – aorth
+++ igblast-software [2020/04/16 10:47] – aorth
@@ Line 5: / Line 5: @@
 ===== Information =====
-  * Version: 1.6.0
+  * Version: 1.10.0
   * Added: September, 2016
+  * Updated: April, 2020
   * Link: https://ncbi.github.io/igblast/
@@ Line 14: / Line 15: @@
 <code>$ module avail igblast</code>
-Load igblast
+Load one version into your environment and run it:
-<code>$ module load igblast/1.6.0</code>
+<code>$ module load igblast/1.10.0
+$ igblastn
+$ igblastp</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.10.0/ncbi-igblast-1.10.0-x64-linux.tar.gz
-$ wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.6.0/ncbi-igblast-1.6.0-src.zip
+$ tar xf ncbi-igblast-1.10.0-x64-linux.tar.gz
-$ unzip ncbi-igblast-1.6.0-src.zip
+$ sudo mkdir -p /export/apps/igblast/1.10.0
-$ cd ncbi-igblast-1.6.0-src/c++
+$ sudo mkdir -p /export/apps/igblast/1.10.0/data
-$ sudo mkdir -p /export/apps/igblast/1.6.0/
+$ sudo cp -r ncbi-igblast-1.10.0/* /export/apps/igblast/1.10.0
-$ sudo chown -R joguya:joguya /export/apps/igblast/1.6.0/
-$ scl enable devtoolset-2 bash
-$ ./configure --prefix=/export/apps/igblast/1.6.0/
-$ make
-$ make install
-$ sudo chown -R root:root /export/apps/igblast/1.6.0/
 </code>
+Note: I did not install the databases as I am not sure we need them, as we are not using igblast directly right now. Otherwise, the [[https://ncbi.github.io/igblast/|documentation]] says we need them for versions less than 1.13.0.