Differences

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--- htslib-software [2021/09/05 10:17] – aorth
+++ htslib-software [2025/03/03 07:02] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 1.13
+  * Latest Version: 1.17
   * Added: March, 2015
-  * Updated: September, 2021
+  * Updated: March, 2025
   * Link: https://github.com/samtools/htslib
 ===== Usage =====
-See versions of htslib which are available:
+See versions which are available:
 <code>$ module avail htslib</code>
-Load one version into your environment and run some common commands:
+Load one version into your environment and run it:
-<code>$ module load htslib/1.13
+<code>$ module load htslib/1.17
 $ tabix
 $ bgzip</code>
@@ Line 23: / Line 23: @@
 <code>$ cd /tmp
-$ wget https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2
+$ wget https://github.com/samtools/htslib/releases/download/1.17/htslib-1.17.tar.bz2
-$ tar xf htslib-1.13.tar.bz2
+$ tar xf htslib-1.17.tar.bz2
-$ cd htslib-1.13
+$ cd htslib-1.17
-# install a newer compiler from Red Hat software collections
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.17
-$ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++
-$ scl enable devtoolset-7 bash
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.13
 $ make
-$ sudo mkdir -p /export/apps/htslib/1.13
+$ sudo mkdir -p /export/apps/htslib/1.17
-$ sudo chown aorth /export/apps/htslib/1.13
+$ sudo chown aorth /export/apps/htslib/1.17
 $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.13</code>
+$ sudo chown -R root:root /export/apps/htslib/1.17</code>
+Note: as of 1.17 this is compiled on CentOS Stream 8.