Differences

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--- htslib-software [2017/10/28 14:15] – aorth
+++ htslib-software [2025/03/03 07:02] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 1.6
+  * Latest Version: 1.17
   * Added: March, 2015
-  * Updated: Оctober, 2017
+  * Updated: March, 2025
   * Link: https://github.com/samtools/htslib
 ===== Usage =====
-=== See versions of htslib which are available ===
+See versions which are available:
 <code>$ module avail htslib</code>
-=== Load and run htslib ===
+Load one version into your environment and run it:
-<code>$ module load htslib/1.6</code>
+<code>$ module load htslib/1.17
+$ tabix
+$ bgzip</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2
+<code>$ cd /tmp
-$ tar xf htslib-1.6.tar.bz2
+$ wget https://github.com/samtools/htslib/releases/download/1.17/htslib-1.17.tar.bz2
-$ cd htslib-1.6
+$ tar xf htslib-1.17.tar.bz2
-$ sudo mkdir /export/apps/htslib/1.6
+$ cd htslib-1.17
-$ sudo chown aorth /export/apps/htslib/1.6
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.17
-$ scl enable devtoolset-4 bash
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6
 $ make
+$ sudo mkdir -p /export/apps/htslib/1.17
+$ sudo chown aorth /export/apps/htslib/1.17
 $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.6</code>
+$ sudo chown -R root:root /export/apps/htslib/1.17</code>
+Note: as of 1.17 this is compiled on CentOS Stream 8.