htslib-software
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htslib-software [2017/05/04 09:20] – aorth | htslib-software [2021/09/05 10:17] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Latest Version: 1.3.2 | + | * Latest Version: 1.13 |
* Added: March, 2015 | * Added: March, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of htslib which are available | + | See versions of htslib which are available: |
< | < | ||
- | === Load and run htslib === | + | Load one version into your environment |
- | < | + | < |
+ | $ tabix | ||
+ | $ bgzip</ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 21: | Line 23: | ||
< | < | ||
- | $ wget -qO- "https:// | + | $ wget https:// |
- | $ sudo mkdir / | + | $ tar xf htslib-1.13.tar.bz2 |
- | $ sudo chown -R joguya: | + | $ cd htslib-1.13 |
- | $ LD_LIBRARY_PATH=/ | + | # install a newer compiler from Red Hat software collections |
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | $ ./configure --enable-plugins --enable-libcurl --prefix=/ | ||
$ make | $ make | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown aorth / | ||
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + |
htslib-software.txt · Last modified: 2022/06/23 09:29 by aorth