ILRI Research Computing

User Tools

Site Tools

You are here: start » htslib-software
htslib-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
htslib-software [2022/06/23 09:29] – aorthhtslib-software [2025/03/03 07:02] (current) – aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.15.1+  * Latest Version: 1.17
   * Added: March, 2015   * Added: March, 2015
-  * Updated: June, 2022+  * Updated: March, 2025
   * Link: https://github.com/samtools/htslib   * Link: https://github.com/samtools/htslib
  
Line 15: Line 15:
  
 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load htslib/1.15.1+<code>$ module load htslib/1.17
 $ tabix $ tabix
 $ bgzip</code> $ bgzip</code>
Line 23: Line 23:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2 +$ wget https://github.com/samtools/htslib/releases/download/1.17/htslib-1.17.tar.bz2 
-$ tar xf htslib-1.15.1.tar.bz2 +$ tar xf htslib-1.17.tar.bz2 
-$ cd htslib-1.15.1 +$ cd htslib-1.17 
-$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.15.1+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.17
 $ make $ make
-$ sudo mkdir -p /export/apps/htslib/1.15.1 +$ sudo mkdir -p /export/apps/htslib/1.17 
-$ sudo chown aorth /export/apps/htslib/1.15.1+$ sudo chown aorth /export/apps/htslib/1.17
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/htslib/1.15.1</code>+$ sudo chown -R root:root /export/apps/htslib/1.17</code>
  
-Note: as of 1.15.1 this was compiled on CentOS Stream 8+Note: as of 1.17 this is compiled on CentOS Stream 8.
htslib-software.txt · Last modified: by aorth