Differences

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--- htslib-software [2017/10/28 14:15] – aorth
+++ htslib-software [2017/12/24 15:35] – aorth
@@ Line 11: / Line 11: @@
 ===== Usage =====
-=== See versions of htslib which are available ===
+See versions of htslib which are available:
 <code>$ module avail htslib</code>
-=== Load and run htslib ===
+Load one version into your environment:
 <code>$ module load htslib/1.6</code>
@@ Line 20: / Line 20: @@
 Notes from the sysadmin during installation:
-<code>$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2
+<code>$ cd /tmp
-$ tar xf htslib-1.6.tar.bz2
+$ wget https://github.com/samtools/htslib/releases/download/1.6/htslib-1.6.tar.bz2
+$ tar xf htslib-1.6.tar.bz2
 $ cd htslib-1.6
-$ sudo mkdir /export/apps/htslib/1.6
-$ sudo chown aorth /export/apps/htslib/1.6
-$ scl enable devtoolset-4 bash
 $ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/htslib/1.6
 $ make
+$ sudo mv /export/apps/htslib/1.6 /export/apps/htslib/1.6.old
+$ sudo mkdir /export/apps/htslib/1.6
+$ sudo chown aorth /export/apps/htslib/1.6
 $ make install
 $ sudo chown -R root:root /export/apps/htslib/1.6</code>