This is an old revision of the document!
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states(e.g. phenotypes).
See which versions of GSEA are available:
$ module avail gsea
$ module load gsea/2.2.3
Notes from the sysadmin during installation:
$ cd /tmp $ wget "http://software.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/software/gsea2-2.2.3.jar" -O gsea2-2.2.3.jar $ sudo mkdir -p /export/apps/gsea/2.2.3/ $ sudo cp gsea2-2.2.3.jar /export/apps/gsea/2.2.3/