flash-software
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flash-software [2014/12/16 09:19] – [v1.2.11] joguya | flash-software [2017/09/20 13:29] (current) – aorth | ||
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FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies. | FLASH, Fast Length Adjustment of SHort reads, is a very accurate fast tool to merge paired-end reads from fragments that are shorter than twice the length of reads. The extended length of reads has a significant positive impact on improvement of genome assemblies. | ||
- | ==== v1.2.11 | + | ===== Information ===== |
* Version: 1.2.11 | * Version: 1.2.11 | ||
* Added: December, 2014 | * Added: December, 2014 | ||
- | * Link: http:// | + | * Link: http:// |
- | === Usage === | + | ===== Usage ===== |
- | | + | Show all available versions of flash: |
- | * Load flash module: < | + | |
- | * get quick help:< | + | |
+ | < | ||
- | === Installation === | + | Load flash into your environment: |
- | * Download | + | |
- | tar -xvf FLASH-1.2.11.tar.gz | + | |
- | cd FLASH-1.2.11 | + | |
- | make | + | |
- | sudo mkdir -p / | + | |
- | sudo cp flash / | + | |
- | * flash module file< | + | |
- | # | + | |
- | ##################################################################### | + | |
- | ## | + | |
- | ## FLASH Modulefile | + | |
- | ## By James Oguya, j.oguya@cgiar.org | + | |
- | ## December, 2014 | + | |
- | ## | + | |
- | set appname | + | < |
- | set version | + | |
- | set prefix | + | |
- | set exec_prefix | + | |
- | set url " | + | |
- | set msg " | + | |
- | module-whatis | + | Get quick help: |
+ | < | ||
- | proc ModulesHelp { } { | + | ===== Installation ===== |
- | puts stderr " | + | Notes from the sysadmin during installation. |
- | } | + | |
- | + | ||
- | conflict | + | |
- | + | ||
- | prepend-path | + | |
- | </ | + | |
- | + | ||
- | * deploy | + | |
+ | < | ||
+ | $ tar -xvf FLASH-1.2.11.tar.gz | ||
+ | $ cd FLASH-1.2.11 | ||
+ | $ make | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo cp flash / |
flash-software.txt · Last modified: 2017/09/20 13:29 by aorth