Differences

This shows you the differences between two versions of the page.

--- cutadapt-software [2015/06/24 09:08] – aorth
+++ cutadapt-software [2025/04/30 09:01] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: v1.8.1
+  * Version: 5.0
   * Added: June, 2015
+  * Updated: April, 2025
   * Link: https://github.com/marcelm/cutadapt
 ===== Usage =====
-=== See versions of cutadapt which are available ===
+See available versions:
-<code>module avail cutadapt</code>
+<code>$ module avail cutadapt</code>
+Load one version into your environment and run it:
+<code>$ module load cutadapt/5.0
+$ cutadapt</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ sudo mkdir -p /export/apps/cutadapt/v1.8.1
+<code>$ module load python/3.10
-$ module load python/2.7.8
+$ sudo mkdir -p /export/apps/cutadapt/5.0
-$ sudo chown aorth /export/apps/cutadapt/v1.8.1
+$ sudo chown aorth:aorth /export/apps/cutadapt/5.0
-$ pip install cutadapt --install-option="--prefix=/export/apps/cutadapt/v1.8.1"
+$ python -m venv /export/apps/cutadapt/5.0
-$ sudo chown root:root /export/apps/cutadapt/v1.8.1</code>
+$ python -m pip install --upgrade pip wheel setuptools
+$ python -m pip install cutadapt==5.0
+$ sudo chown -R root:root /export/apps/cutadapt/5.0</code>