cutadapt-software
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| cutadapt-software [2015/06/24 09:08] – created aorth | cutadapt-software [2025/04/30 09:01] (current) – aorth | ||
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| ====== cutadapt ====== | ====== cutadapt ====== | ||
| - | A framework to process | + | Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence |
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: | + | * Version: |
| * Added: June, 2015 | * Added: June, 2015 | ||
| + | * Updated: April, 2025 | ||
| * Link: https:// | * Link: https:// | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | === See versions of cutadapt which are available | + | See available |
| - | < | + | < |
| + | |||
| + | Load one version into your environment and run it: | ||
| + | < | ||
| + | $ cutadapt</ | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ module load python/ | + | $ sudo mkdir -p / |
| - | $ sudo chown aorth / | + | $ sudo chown aorth:aorth / |
| - | $ pip install cutadapt | + | $ python |
| - | $ sudo chown root:root / | + | $ python -m pip install --upgrade pip wheel setuptools |
| + | $ python -m pip install cutadapt==5.0 | ||
| + | $ sudo chown -R root:root / | ||
cutadapt-software.1435136896.txt.gz · Last modified: by aorth