cutadapt-software
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cutadapt-software [2015/06/24 09:08] – aorth | cutadapt-software [2019/01/20 10:45] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: June, 2015 | * Added: June, 2015 | ||
+ | * Updated: January, 2019 | ||
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of cutadapt | + | See available |
- | < | + | < |
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ cutadapt</ | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ module load python/2.7.8 | + | $ sudo chown aorth / |
- | $ sudo chown aorth / | + | $ python36 |
- | $ pip install cutadapt | + | $ . / |
- | $ sudo chown root:root / | + | $ pip install --upgrade pip setuptools |
+ | $ pip install cutadapt==v1.18 | ||
+ | $ sudo chown -R root:root / | ||
+ | |||
+ | Installation is greatly simplified by using Python 3's built-in venv module to create a dedicated environment, |
cutadapt-software.txt · Last modified: 2021/12/15 07:33 by aorth