changeo-software
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Table of Contents
Change-O
Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin sequences, and reconstructing germline sequences.
Information
- Version: 0.3.9
- Added: September, 2016
- Updated: November, 2017
Usage
See which versions of changeo are available:
$ module avail changeo
Load changeo into your environment:
$ module load changeo/0.3.9
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ module load python/3.4.7 $ scl enable devtoolset-4 bash $ sudo mkdir /export/apps/changeo/0.3.9 $ sudo chown aorth /export/apps/changeo/0.3.9 $ python -m venv /export/apps/changeo/0.3.9 $ . /export/apps/changeo/0.3.9/bin/activate $ pip3 install -U pip setuptools $ pip3 install -U numpy scipy pandas biopython $ pip3 install -U changeo $ sudo chown -R root:root /export/apps/changeo/0.3.9
changeo-software.1509986152.txt.gz · Last modified: 2017/11/06 16:35 by aorth