changeo-software
This is an old revision of the document!
Table of Contents
Change-O
Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin sequences, and reconstructing germline sequences.
Information
- Version: 0.3.5
- Added: September, 2016
- Updated: May, 2017
Usage
See which versions of changeo are available:
$ module avail changeo
Load changeo into your environment:
$ module load changeo/0.3.5
Installation
Notes from the sysadmin during installation:
$ scl enable devtoolset-2 bash $ module load python/3.4.3 $ sudo mkdir /export/apps/changeo/0.3.5 $ sudo chown aorth /export/apps/changeo/0.3.5 $ python -m venv /export/apps/changeo/0.3.5 $ . /export/apps/changeo/0.3.5/bin/activate $ pip install -U pip setuptools $ pip install -U numpy scipy pandas biopython $ pip install -U changeo $ sudo chown -R root:root /export/apps/changeo/0.3.5
Change-O requires presto, so either install it and all of its dependencies here as well, or just make sure the Change-O module also loads presto.
changeo-software.1496219385.txt.gz · Last modified: 2017/05/31 08:29 by aorth