Differences

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--- changeo-software [2017/05/31 08:28] – aorth
+++ changeo-software [2022/04/25 15:14] (current) – aorth
@@ Line 5: / Line 5: @@
 ===== Information =====
-  * Version: 0.3.5
+  * Version: 1.2.0
   * Added: September, 2016
-  * Updated: May, 2017
+  * Updated: April, 2022
-  * Link: http://changeo.readthedocs.io/en/latest/overview.html
+  * Link: https://changeo.readthedocs.io/en/latest/overview.html
 ===== Usage =====
@@ Line 16: / Line 16: @@
 Load changeo into your environment:
-<code>$ module load changeo/0.3.5</code>
+<code>$ module load changeo/1.2.0</code>
 ===== Installation ======
@@ Line 22: / Line 22: @@
 Notes from the sysadmin during installation:
-<code>$ scl enable devtoolset-2 bash
+<code>$ cd /tmp
-$ module load python/3.4.3
+$ module load python/3.9
-$ sudo mkdir /export/apps/changeo/0.3.5
+$ sudo mkdir /export/apps/changeo/1.2.0
-$ sudo chown aorth /export/apps/changeo/0.3.5
+$ sudo chown aorth /export/apps/changeo/1.2.0
-$ python -m venv /export/apps/changeo/0.3.5
+$ python -m venv /export/apps/changeo/1.2.0
-$ . /export/apps/changeo/0.3.5/bin/activate
+$ source /export/apps/changeo/1.2.0/bin/activate
-$ pip install -U pip setuptools
+$ pip install --upgrade setuptools pip wheel
-$ pip install -U numpy scipy pandas biopython
+$ pip install changeo==1.2.0
-$ pip install -U changeo
+$ sudo chown -R root:root /export/apps/changeo/1.2.0</code>
-$ sudo chown -R root:root /export/apps/changeo/0.3.5</code>