User Tools

Site Tools


changeo-software

Change-O

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin sequences, and reconstructing germline sequences.

Information

Usage

See which versions of changeo are available:

$ module avail changeo

Load changeo into your environment:

$ module load changeo/1.2.0

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ module load python/3.9
$ sudo mkdir /export/apps/changeo/1.2.0
$ sudo chown aorth /export/apps/changeo/1.2.0
$ python -m venv /export/apps/changeo/1.2.0
$ source /export/apps/changeo/1.2.0/bin/activate
$ pip install --upgrade setuptools pip wheel
$ pip install changeo==1.2.0
$ sudo chown -R root:root /export/apps/changeo/1.2.0
changeo-software.txt · Last modified: 2022/04/25 15:14 by aorth