Create new T.pava Chr1 Chado database from Chr1 Genbank file. Local version of Genbank file does not work. Downloaded new file from Genbank: NC_001142.gbk

Convert file to gff using script:

genbank2gff3.pl

Create pgsql database.

createdb --template=chado tparvadb
psql tparvadb
chado> SELECT * FROM organism;
chado> INSERT INTO organism ( abbreviation, genus, species, common_name) VALUES ('T.testus','Test','testus','test');

chado> \q

Load gff3 data into database

gmod_bulk_load_gff3.pl  --dbname tparvadb --dbxref GeneID --organism T.parva --gff T.parva_chr1.gb.gff