chado
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chado [2010/01/13 09:07] – 172.26.15.184 | chado [2010/01/14 08:12] – 172.26.15.184 | ||
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====== Chado ====== | ====== Chado ====== | ||
- | createdb --template=chado tparvadb | + | Create new T.pava Chr1 Chado database from Chr1 Genbank file. Local version of Genbank file does not work. Downloaded new file from Genbank: NC_001142.gbk |
+ | |||
+ | Convert file to gff using script: | ||
+ | < | ||
+ | |||
+ | Create pgsql database. | ||
+ | |||
+ | |||
+ | < | ||
+ | psql tparvadb | ||
+ | chado> SELECT * FROM organism; | ||
+ | chado> INSERT INTO organism ( abbreviation, | ||
+ | |||
+ | chado> \q</ | ||
+ | |||
+ | Load gff3 data into database | ||
+ | < | ||
- | psql chado | ||
- | | ||
- | | ||
- | | ||
chado.txt · Last modified: 2010/05/22 14:19 by 127.0.0.1