A program for clustering and comparing protein or nucleotide sequences.

• Version: 4.6.6
• Added: August, 2016
• Link: http://weizhongli-lab.org/cd-hit/

See which versions of cd-hit are available:

$ module avail cd-hit

Load cd-hit

$ module load cd-hit/4.6.6

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO - https://github.com/weizhongli/cdhit/archive/V4.6.6.tar.gz | tar -xzv
$ cd cdhit-4.6.6/
$ scl enable devtoolset-2 bash
$ module load openmpi/1.8.2
$ sudo mkdir -p /export/apps/cd-hit/4.6.6/
$ sudo chown joguya:joguya /export/apps/cd-hit/4.6.6/
$ make
$ sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' *.pl
$ find . -type f -perm /o+x -exec cp -v {} /export/apps/cd-hit/4.6.6/ \;
$ cd cd-hit-auxtools
$ make
$ sed -i 's|#!/usr/bin/perl|#!/usr/bin/env perl|g' *.pl
$ find . -type f -perm /o+x -exec cp -v {} /export/apps/cd-hit/4.6.6/ \;
$ sudo chown -R root:root /export/apps/cd-hit/4.6.6/