Differences

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--- bwa-software [2020/06/17 07:04] – aorth
+++ bwa-software [2025/05/13 08:01] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest version: 0.7.17
+  * Latest version: 0.7.19
   * Added: April, 2013
-  * Updated: June, 2020
+  * Updated: May, 2025
   * Link: https://github.com/lh3/bwa
 ===== Usage =====
-See versions of bwa which are available:
+See versions which are available:
 <code>$ module avail bwa</code>
@@ Line 17: / Line 17: @@
 Load one version into your environment and run it:
-<code>$ module load bwa/0.7.17</code>
+<code>$ module load bwa/0.7.19
+$ bwa</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>
+<code>$ cd /tmp
-$ cd /tmp
+$ git clone https://github.com/lh3/bwa.git -b v0.7.19
-$ wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2
+$ cd bwa
-$ tar xf bwa-0.7.17.tar.bz2
-$ cd bwa-0.7.17
 $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.17/{bin,share/man/man1}
+$ sudo mkdir -p /export/apps/bwa/0.7.19/{bin,share/man/man1}
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.17/bin
+$ sudo cp bwa *.pl /export/apps/bwa/0.7.19/bin
-$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.17
+$ sudo cp bwa.1 /export/apps/bwa/0.7.19/share/man/man1
-</code>
+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.19</code>