Differences

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--- bwa-software [2017/05/03 09:49] – aorth
+++ bwa-software [2020/06/17 07:03] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest version: 0.7.15
+  * Latest version: 0.7.17
   * Added: April, 2013
-  * Updated: February, 2017
+  * Updated: June, 2020
-  * Link: http://bio-bwa.sourceforge.net
+  * Link: https://github.com/lh3/bwa
 ===== Usage =====
-=== See versions of bwa which are available ===
+See versions of bwa which are available:
-<code>module avail bwa</code>
+<code>$ module avail bwa</code>
+Load one version into your environment and run it:
+<code>$ module load bwa/0.7.17</code>
 ===== Installation ======
@@ Line 19: / Line 24: @@
 <code>
 $ cd /tmp
-$ wget -qO- "https://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.15.tar.bz2?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1486290428&use_mirror=netix" | tar xjv
+$ wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2
-$ cd bwa-0.7.15/
+$ tar xf bwa-0.7.17.tar.bz2
-$ scl enable devtoolset-2 bash
+$ cd bwa-0.7.17
 $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.15/{bin,share/man/man1}
+$ sudo mkdir -p /export/apps/bwa/0.7.17/{bin,share/man/man1}
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.15/bin
+$ sudo cp bwa *.pl /export/apps/bwa/0.7.17/bin
-$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.15/
 </code>