Differences

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--- bwa-software [2015/03/13 08:00] – created aorth
+++ bwa-software [2017/05/03 09:49] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 0.7.12
+  * Latest version: 0.7.15
   * Added: April, 2013
-  * Updated: March, 2015
+  * Updated: February, 2017
   * Link: http://bio-bwa.sourceforge.net
@@ Line 17: / Line 17: @@
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>
-$ wget 'http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.12.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1426229921&use_mirror=liquidtelecom' -O bwa-0.7.12.tar.bz2
+$ cd /tmp
-$ tar xf bwa-0.7.12.tar.bz2
+$ wget -qO- "https://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.15.tar.bz2?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbio-bwa%2Ffiles%2F&ts=1486290428&use_mirror=netix" | tar xjv
-$ cd bwa-0.7.12
+$ cd bwa-0.7.15/
-$ sed -i 's/gcc$/clang/' Makefile
+$ scl enable devtoolset-2 bash
 $ make
-$ sudo mkdir -p /export/apps/bwa/0.7.12/{bin,share/man/man1}
+$ sudo mkdir -p /export/apps/bwa/0.7.15/{bin,share/man/man1}
-$ sudo cp bwa *.pl /export/apps/bwa/0.7.12/bin
+$ sudo cp bwa *.pl /export/apps/bwa/0.7.15/bin
-$ sudo cp bwa.1 /export/apps/bwa/0.7.12/share/man/man1</code>
+$ sudo cp -rv bwakit/ /export/apps/bwa/0.7.15/
+</code>