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busco-software

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BUSCO

BUSCO (Benchmarking Universal Single-Copy Orthologs) assesses genome assembly and annotation completeness with single-copy ortholog.

Information

Usage

See versions of BUSCO which are available:

$ module avail BUSCO

Installation

Notes from the sysadmin during installation:

http://busco.ezlab.org/files/BUSCO_v1.1b1.tar.gz
tar -xvf BUSCO_v1.1b1.tar.gz
cd BUSCO_v1.1b1
ln -s BUSCO_v1.1b1.py BUSCO_v1.1b.py
chmod +x BUSCO_v1.1b1.py
sudo mkdir -p /export/apps/BUSCO/v1.1b/
sudo cp -r . /export/apps/BUSCO/v1.1b/

Running

After loading the module, consult the built-in help:

$ BUSCO_v1.1b.py --help
busco-software.1442132323.txt.gz · Last modified: 2015/09/13 08:18 by aorth