ILRI Research Computing

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== Perl ======
The Bioperl Project is an international association of users & developers of open source Perl tools for bioinformatics, genomics and life science.

===== Information =====

  * Version: 1.7.2
  * Updated: December, 2017
  * Link: http://bioperl.org

===== Usage =====

See which versions of bioperl are available:
<code>$ module avail bioperl</code>

Load one version of bioperl into your environment:
<code>$ module load bioperl/1.7.2</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir /export/apps/bioperl/1.7.2
$ sudo chown aorth /export/apps/bioperl/1.7.2
$ cpanm -l /export/apps/bioperl/1.7.2 Bio::Perl
$ cpanm -l /export/apps/bioperl/1.7.2 BioUtil::Seq
$ cpanm -l /export/apps/bioperl/1.7.2 Bio::Graphics
$ sudo chown -R root:root /export/apps/bioperl/1.7.2</code>

This was compiled on a CentOS 7 system with the distribution's perl to keep the installation as simple as possible.