bcftools-software
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Table of Contents
bcftools
BCFtools implements utilities for variant calling (in conjunction with SAMtools) and manipulating VCF and BCF files. The program is intended to replace the Perl-based tools from vcftools.
Information
- Latest Version: 1.6
- Added: September, 2015
- Updated: December, 2017
Usage
See versions of bcftools which are available:
$ module avail bcftools
Load one version into your environment:
$ module load bcftools/1.6
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://github.com/samtools/bcftools/releases/download/1.6/bcftools-1.6.tar.bz2 $ tar xf bcftools-1.6.tar.bz2 $ cd bcftools-1.6 $ ./configure --prefix=/export/apps/bcftools/1.6 $ make all all-htslib $ sudo mkdir /export/apps/bcftools/1.6 $ sudo chown aorth /export/apps/bcftools/1.6 $ make install install-htslib $ sudo chown -R root:root /export/apps/bcftools/1.6
bcftools-software.1514127695.txt.gz · Last modified: 2017/12/24 15:01 by aorth