Differences

This shows you the differences between two versions of the page.

--- bcftools-software [2017/12/24 15:01] – aorth
+++ bcftools-software [2025/12/05 07:28] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 1.6
+  * Latest Version: 1.22
   * Added: September, 2015
-  * Updated: December, 2017
+  * Updated: December, 2025
   * Link: https://samtools.github.io/bcftools
@@ Line 14: / Line 14: @@
 <code>$ module avail bcftools</code>
-Load one version into your environment:
+Load one version into your environment and run it:
-<code>$ module load bcftools/1.6</code>
+<code>$ module load bcftools/1.22
+$ bcftools</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ cd /tmp/
-$ wget https://github.com/samtools/bcftools/releases/download/1.6/bcftools-1.6.tar.bz2
+$ wget https://github.com/samtools/bcftools/releases/download/1.22/bcftools-1.22.tar.bz2
-$ tar xf bcftools-1.6.tar.bz2
+$ cd bcftools-1.22
-$ cd bcftools-1.6
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/bcftools/1.22 --with-htslib=/export/apps/htslib/1.22.1
-$ ./configure --prefix=/export/apps/bcftools/1.6
+$ make
-$ make all all-htslib
+$ sudo mkdir -p /export/apps/bcftools/1.22
-$ sudo mkdir /export/apps/bcftools/1.6
+$ sudo chown aorth:aorth /export/apps/bcftools/1.22
-$ sudo chown aorth /export/apps/bcftools/1.6
+$ make install
-$ make install install-htslib
+$ sudo chown -R root:root /export/apps/bcftools/1.22</code>
-$ sudo chown -R root:root /export/apps/bcftools/1.6</code>
+This links bcftools against a system-wide installation of htslib/1.22.