abyss-software
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Table of Contents
Abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler.
Information
- Version: 2.1.4
- Added: August, 2013
- Updated: November, 2018
- K-mer size: 128 (default at compile time)
Usage
See versions of abyss which are available:
$ module avail abyss
Load one version into your environment and run it:
$ module load abyss/2.1.4 $ abyss-pe help
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases/2.1.4/abyss-2.1.4.tar.gz $ tar xf abyss-2.1.4.tar.gz $ cd abyss-2.1.4 $ sudo yum install sparsehash-devel.x86_64 openmpi-devel.x86_64 $ ./configure --prefix=/export/apps/abyss/2.1.4 $ make -j4 $ sudo mkdir -p /export/apps/abyss/2.1.4 $ sudo chown aorth /export/apps/abyss/2.1.4 $ make install $ sudo chown -R root:root /export/apps/abyss/2.1.4 $ sudo yum remove sparsehash-devel.x86_64 openmpi-devel.x86_64
abyss-software.1542486908.txt.gz · Last modified: 2018/11/17 20:35 by aorth