abyss-software
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Table of Contents
Abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler.
Information
- Version: 2.0.2
- Added: August, 2013
- Updated: October, 2017
- K-mer size: 64 (default at compile time)
Usage
See versions of abyss which are available:
$ module avail abyss
Load one version into your environment and run it:
$ module load abyss/2.0.2 $ abyss-pe help
Installation
Notes from the sysadmin during installation:
$ cd /tmp $ wget http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases/2.0.2/abyss-2.0.2.tar.gz $ tar xf abyss-2.0.2.tar.gz $ cd abyss-2.0.2 $ scl enable devtoolset-4 bash $ ./configure --prefix=/export/apps/abyss/2.0.2 --with-boost=/export/apps/boost/1.65.1/include --with-mpi=/export/apps/openmpi/1.8.2 $ make -j4 $ sudo mkdir /export/apps/abyss/2.0.2 $ sudo chown aorth /export/apps/abyss/2.0.2 $ make install $ sudo chown -R root:root /export/apps/abyss/2.0.2
abyss-software.1507988392.txt.gz · Last modified: 2017/10/14 13:39 by aorth