abyss-software
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Table of Contents
Abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
Information
- Version: 1.5.2
- Added: August, 2013
- Updated: August, 2014
- K-mer size: 64 (default at compile time)
Usage
See versions of abyss which are available
module avail abyss
Installation
Notes from the sysadmin during installation:
cd /tmp wget https://github.com/bcgsc/abyss/releases/download/1.5.2/abyss-1.5.2.tar.gz tar xf abyss-1.5.2.tar.gz cd abyss-1.5.2 scl enable devtoolset-1.1 bash mkdir /tmp/abyss-build cd /tmp/abyss-build LIBS="-lpthread" /tmp/abyss-1.5.2/configure --prefix=/export/apps/abyss/1.5.2 --with-boost=/export/apps/boost/1.50.0/include --with-mpi=/export/apps/openmpi/1.8.2 make -j4 sudo mkdir -p /export/apps/abyss/1.5.2 sudo chown aorth /export/apps/abyss/1.5.2 make install sudo chown -R root:root /export/apps/abyss/1.5.2
Note: Seems to have a problem compiling with GCC 4.7.2 when you don't specify the extra LIBS. CentOS 6's 4.4.x works fine.
abyss-software.1409220716.txt.gz · Last modified: 2014/08/28 10:11 by aorth