Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

• Version: 1.5.1
• Added: August, 2013
• Updated: June 10, 2014
• K-mer size: 64 (default at compile time)
• Link: http://www.bcgsc.ca/platform/bioinfo/software/abyss

module avail abyss

Notes from the sysadmin during installation:

wget https://github.com/bcgsc/abyss/releases/download/1.5.1/abyss-1.5.1.tar.gz
tar zxf abyss-1.5.1.tar.gz
cd abyss-1.5.1
scl enable devtoolset-1.1 bash
mkdir /tmp/abyss-build
cd /tmp/abyss-build
~/src/abyss-1.5.1/configure --prefix=/export/apps/abyss/1.5.1 --with-boost=/export/apps/boost/1.50.0/include/
sudo mkdir -p /export/apps/abyss/1.5.1
sudo chown aorth /export/apps/abyss/1.5.1
sudo chown -R root:root /export/apps/abyss/1.5.1