abyss-software
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abyss-software [2015/06/10 11:50] – joguya | abyss-software [2017/10/14 13:39] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: August, 2013 | * Added: August, 2013 | ||
- | * Updated: | + | * Updated: |
* K-mer size: 64 (default at compile time) | * K-mer size: 64 (default at compile time) | ||
* Link: http:// | * Link: http:// | ||
Line 14: | Line 14: | ||
See versions of abyss which are available: | See versions of abyss which are available: | ||
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ abyss-pe help</ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 19: | Line 23: | ||
< | < | ||
- | $ wget https://github.com/bcgsc/ | + | $ wget http://www.bcgsc.ca/ |
- | $ tar -xvf abyss-1.9.0.tar.gz | + | $ tar xf abyss-2.0.2.tar.gz |
- | $ cd abyss-1.9.0 | + | $ cd abyss-2.0.2 |
- | $ scl enable devtoolset-2 bash | + | $ scl enable devtoolset-4 bash |
- | $ sudo mkdir / | + | $ ./configure --prefix=/ |
- | $ sudo chown joguya: | + | |
- | $ CC=clang | + | |
$ make -j4 | $ make -j4 | ||
+ | $ sudo mkdir / | ||
+ | $ sudo chown aorth / | ||
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + |
abyss-software.txt · Last modified: 2019/07/10 14:25 by aorth