Selecting a specific region in a vcf file

In order to obtain a subset of the vcf file based on genome region please use the following command. Original documentation here

module load tabix

bgzip Genotypes2015.annotated.vcf

tabix -p vcf /home/mkatari/Genotypes2015.annotated.vcf.gz

tabix -p vcf /home/mkatari/Genotypes2015.annotated.vcf.gz Chromosome11:5532312-5532957