ILRI Research Computing

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====== wtdbg2 ======
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.

===== Information =====

  * Latest version: 2.4
  * Added: July, 2019
  * Link: https://github.com/ruanjue/wtdbg2

===== Usage =====

See versions which are available:
<code>$ module avail wtdbg2</code>

Load one version into your environment and run it:
<code>$ module load wtdbg2/2.4
$ wtdbg2</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://github.com/ruanjue/wtdbg2/releases/download/v2.4/wtdbg-2.4_x64_linux.tar.gz
$ tar xf wtdbg-2.4_x64_linux.tar.gz
$ sudo mkdir -p /export/apps/wtdbg/2.4/bin
$ sudo cp wtdbg-2.4_x64_linux/* /export/apps/wtdbg/2.4/bin
$ sudo cp -r wtdbg-2.4_x64_linux/scripts/ /export/apps/wtdbg/2.4</code>