Differences

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--- wise-software [2014/11/07 17:19] – created aorth
+++ wise-software [2014/11/07 17:20] (current) – aorth
@@ Line 15: / Line 15: @@
 <code>$ cd /tmp
-$ wget ftp://genome.crg.es/pub/software/geneid/geneid_v1.4.4.Jan_13_2011.tar.gz
+$ wget http://ftp-stud.hs-esslingen.de/ubuntu/pool/universe/w/wise/wise_2.4.1.orig.tar.gz
-$ cd geneid
+$ tar xf wise_2.4.1.orig.tar.gz
+$ cd wise-2.4.1/src
 $ scl enable devtoolset-2 bash
-$ make
+$ sed -i 's/getline/getline_new/' HMMer2/sqio.c
-$ sudo mkdir -p /export/apps/geneid/1.4.4/bin
+$ sed -i '23 s/isnumber/isdigit/' models/phasemodel.c
-$ sudo cp bin/geneid /export/apps/geneid/1.4.4/bin</code>
+$ make all
+$ cd dyc
+$ make linux
+$ cp dyc ../bin
+$ cd /tmp/wise-2.4.1
+$ sudo mkdir -p /export/apps/wise/2.4.1/bin
+$ sudo cp -v src/bin/* /export/apps/wise/2.4.1/bin
+$ rm -rf src
+$ sudo cp -rv * /export/apps/wise/2.4.1</code>
+Note: compile tips for Wise from here: http://korflab.ucdavis.edu/Datasets/cegma/ubuntu_instructions_1.txt