ILRI Research Computing

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== w2rap-contigger ======
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

===== Information =====

  * Version: git-a43f5a05
  * Added: September, 2017
  * Link: http://bioinfologics.github.io/the-w2rap-contigger/

===== Usage =====

See versions of w2rap-contigger which are available:
<code>$ module avail w2rap-contigger</code>

Load one version into your environment and run it:
<code>$ module load w2rap-contigger/git-a43f5a05
$ w2rap-contigger</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ scl enable devtoolset-4 bash
$ git clone https://github.com/gonzalogacc/w2rap-contigger.git
$ cd w2rap-contigger
$ cmake -D CMAKE_CXX_COMPILER=g++ .
$ make -j4
$ sudo mkdir -p /export/apps/w2rap-contigger/git-a43f5a05
$ sudo cp -r bin/ /export/apps/w2rap-contigger/git-a43f5a05</code>