Differences

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--- velvet-software [2017/09/25 12:27] – aorth
+++ velvet-software [2025/05/06 08:52] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.2.10-kmer111
+  * Version: 1.2.10
-  * MAXKMERLENGTH: 111
   * Added: November, 2012
-  * Updated: September, 2017
+  * Updated: May, 2025
-  * Link: https://www.ebi.ac.uk/~zerbino/velvet/
+  * Link: https://github.com/dzerbino/velvet
 ===== Usage =====
-See versions of velvet which are available:
+See versions which are available:
 <code>$ module avail velvet</code>
+Load one version into your environment and run it:
+<code>$ module load velvet/1.2.10
+$ velvetg</code>
 === Extra information ===
@@ Line 21: / Line 24: @@
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ wget https://github.com/dzerbino/velvet/archive/refs/tags/v1.2.10.tar.gz
-$ wget wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
+$ tar xf v1.2.10.tar.gz
-$ tar xf velvet_1.2.10.tgz
+$ cd velvet-1.2.10
-$ cd velvet_1.2.10
-$ scl enable devtoolset-4 bash
-$ sed -i 's/MAXKMERLENGTH=[0-9].*$/MAXKMERLENGTH=111/' Makefile
 $ make OPENMP=1
 $ make cleanobj
-$ sudo cp -r . /export/apps/velvet/1.2.10-kmer111</code>
+$ sudo cp -r . /export/apps/velvet/1.2.10</code>