velvet-software
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velvet-software [2014/05/27 10:24] – aorth | velvet-software [2017/09/25 12:27] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 1.2.10 | + | * Version: 1.2.10-kmer111 |
- | * MAXKMERLENGTH: | + | * MAXKMERLENGTH: |
- | * Added: November | + | * Added: November, 2012 |
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of velvet which are available | + | See versions of velvet which are available: |
- | < | + | < |
- | + | ||
- | === Memory Estimating === | + | |
- | + | ||
- | The following tool may be helpful in estimating memory requirements for your velvet run: | + | |
- | * http:// | + | |
- | + | ||
- | Make sure you substitute in the correct value for " | + | |
=== Extra information === | === Extra information === | ||
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Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | tar xf velvet_1.2.10.tgz | + | $ wget wget https:// |
- | cd velvet_1.2.10 | + | $ tar xf velvet_1.2.10.tgz |
- | scl enable devtoolset-1.1 bash | + | $ cd velvet_1.2.10 |
- | sed ' | + | $ scl enable devtoolset-4 bash |
- | make -f Makefile.kmer64 | + | $ sed -i ' |
- | make -f Makefile.kmer64 | + | $ make OPENMP=1 |
- | sudo cp -r . / | + | $ make cleanobj |
+ | $ sudo cp -r . / |
velvet-software.txt · Last modified: 2017/09/25 12:27 by aorth