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vcftools-software [2017/02/06 08:24]
joguya created
vcftools-software [2021/03/15 10:10] (current)
aorth
Line 1: Line 1:
 ====== VCFtools ====== ====== VCFtools ======
- 
 VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 0.1.14 +  * Latest Version: 0.1.16
-  * Updated: February, 2017+
   * Added: December, 2012   * Added: December, 2012
 +  * Updated: March, 2021
   * Link: https://vcftools.github.io/   * Link: https://vcftools.github.io/
  
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 <code>$ module avail vcftools</code> <code>$ module avail vcftools</code>
  
-Load vcftools +Load one version into your environment: 
-<code>$ module load vcftools/0.1.14</code>+<code>$ module load vcftools/0.1.16</code>
  
 ===== Installation ====== ===== Installation ======
 +Notes from the sysadmin during installation:
  
-Notes from the sysadmin during installation: +<code>$ cd /tmp 
-<code> +$ wget https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz 
-$ cd /tmp +tar xf vcftools-0.1.16.tar.gz  
-$ wget -qO- "https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz" | tar xzv +cd vcftools-0.1.16 
-cd vcftools-0.1.14/ +$ ./configure --prefix=/export/apps/vcftools/0.1.16
-$ sudo mkdir /export/apps/vcftools/0.1.14/ +
-sudo chown -R joguya:joguya /export/apps/vcftools/0.1.14/ +
-$ scl enable devtoolset-3 bash +
-$ ./configure --prefix=/export/apps/vcftools/0.1.14/+
 $ make -j4 $ make -j4
 +$ sudo mkdir /export/apps/vcftools/0.1.16
 +$ sudo chown aorth /export/apps/vcftools/0.1.16
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/vcftools/0.1.14/ +$ sudo chown -R root:root /export/apps/vcftools/0.1.16</code>
-</code> +
vcftools-software.1486369448.txt.gz · Last modified: 2017/02/06 08:24 by joguya