User Tools

Site Tools


vcfdo-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

vcfdo-software [2021/05/06 10:07] (current)
aorth created
Line 1: Line 1:
 +====== vcfdo ======
 +tools for processing and annotating VCF files, with focus on Plasmodium spp.
  
 +===== Information =====
 +
 +  * Version: git-508cc19b
 +  * Added: May, 2021
 +  * Link: https://github.com/IDEELResearch/vcfdo
 +
 +===== Usage =====
 +
 +See versions of vcfdo which are available:
 +<code>$ module avail vcfdo</code>
 +
 +Load one version into your environment and run it:
 +<code>$ module load vcfdo/git-508cc19b
 +$ vcfdo</code>
 +
 +
 +===== Installation ======
 +Notes from the sysadmin during installation:
 +
 +<code>$ sudo mkdir -p /export/apps/vcfdo/git-508cc19b
 +$ sudo chown -R aorth:aorth /export/apps/vcfdo/git-508cc19b
 +$ module load python/3.7
 +$ python3 -m venv /export/apps/vcfdo/git-508cc19b
 +$ source /export/apps/vcfdo/git-508cc19b/bin/activate
 +$ pip install --upgrade pip setuptools
 +$ pip install git+https://github.com/IDEELResearch/vcfdo
 +$ sudo chown -R root:root /export/apps/vcfdo/git-508cc19b</code>
vcfdo-software.txt · Last modified: 2021/05/06 10:07 by aorth