Differences

This shows you the differences between two versions of the page.

--- usingslurm [2013/05/27 14:57] – [Using SLURM] aorth
+++ usingslurm [Unknown date] (current) – removed - external edit (Unknown date) 127.0.0.1
@@ Line 1: / Line 1: @@
-====== Using SLURM ======
-[[http://slurm.schedmd.com/|SLURM]] is a resource manager and job scheduler for high-performance computing clusters.  At ILRI our SLURM is configured with two main job queues (also called "partitions" in SLURM):
-  * batch
-  * highmem
-To see more information about the queue configuration, use ''sinfo -lNe''.
-==== Interactive jobs ====
-How to get an interactive session, ie when you want to interact with a program (like R, etc):
-<code>[aorth@hpc: ~]$ interactive
-salloc: Granted job allocation 1080
-[aorth@taurus: ~]$</code>
-==== Batch jobs ====
-Request 4 CPUs for a NCBI BLAST+ job in the ''batch'' partition.  Create a file //blast.sbatch//:
-<code>#!/bin/bash
-#SBATCH -p batch
-#SBATCH -n 4
-export BLASTDB=/export/data/bio/ncbi/blast/db
-blastn -query ~/data/sequences/drosoph_14_sequences.seq -db nt -num_threads 4</code>
-Submit the script with ''sbatch'':
-<code>$ sbatch blastn_test.sh
-Submitted batch job 1082</code>
-==== Check SLURM queue ====
-<code>squeue</code>