using-slurm
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using-slurm [2019/02/01 12:17] – jean-baka | using-slurm [2019/02/01 12:37] – [Check queue status] jean-baka | ||
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* highmem | * highmem | ||
- | " | + | " |
To see more information about the queue configuration, | To see more information about the queue configuration, | ||
+ | |||
+ | < | ||
+ | Fri Feb 1 15:27:44 2019 | ||
+ | NODELIST | ||
+ | compute2 | ||
+ | compute03 | ||
+ | compute03 | ||
+ | compute04 | ||
+ | hpc 1 debug* | ||
+ | mammoth | ||
+ | taurus | ||
+ | </ | ||
+ | |||
+ | The above tells you, for instance, that compute04 has 8 CPUs while compute2 has 64 CPUs. And that a job sent to the " | ||
===== Submitting jobs ===== | ===== Submitting jobs ===== | ||
==== Interactive jobs ==== | ==== Interactive jobs ==== | ||
- | How to get an interactive session, | + | How to get an interactive session, |
< | < | ||
salloc: Granted job allocation 1080 | salloc: Granted job allocation 1080 | ||
Line 71: | Line 85: | ||
==== Check queue status ==== | ==== Check queue status ==== | ||
- | < | + | '' |
+ | < | ||
+ | JOBID PARTITION | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | </ | ||
+ | |||
+ | In addition to the information above, it is sometimes useful to know what is the number of CPUs (computing cores) allocated to each job: the scheduler will queue jobs asking for resources that aren't available, most often because the other jobs are eating up all the CPUs available on the host. To get the number of CPUs for each job and display the whole thing nicely, the command is slightly more involved: | ||
+ | |||
+ | < | ||
+ | JOBID PARTITION | ||
+ | 16330 | ||
+ | 16339 | ||
+ | 16340 | ||
+ | 16346 batch velvet_out_ra_10 | ||
+ | 16348 | ||
+ | 16349 | ||
+ | </ | ||
+ | |||
+ | or, alternatively: | ||
+ | |||
+ | < | ||
+ | USER JOBID | ||
+ | pyumbya | ||
+ | ckeambou | ||
+ | ckeambou | ||
+ | dkiambi | ||
+ | fkibegwa | ||
+ | jbaka | ||
+ | </ |
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka