using-slurm
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using-slurm [2017/06/07 06:28] – aorth | using-slurm [2018/11/29 09:25] – [Batch job using local storage] aorth | ||
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Line 42: | Line 42: | ||
Instead, you can use a local " | Instead, you can use a local " | ||
- | < | + | < |
#SBATCH -p batch | #SBATCH -p batch | ||
#SBATCH -n 4 | #SBATCH -n 4 | ||
Line 62: | Line 62: | ||
blastn -query ~/ | blastn -query ~/ | ||
- | All output is directed to '' | + | All output is directed to '' |
==== Check queue status ==== | ==== Check queue status ==== | ||
< | < | ||
- | |||
- | ==== Receive mail notifications ==== | ||
- | To receive mail notifications about the state of your job, add the following lines to your sbatch script: whereby < | ||
- | #SBATCH --mail-user < | ||
- | #SBATCH --mail-type ALL</ | ||
- | |||
- | Notification mail types(--mail-type) can be BEGIN, END, FAIL, REQUEUE and ALL(any state change). | ||
- | |||
- | Example: | ||
- | < | ||
- | #SBATCH --mail-user J.Doe@cgiar.org | ||
- | #SBATCH --mail-type ALL</ | ||
- |
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka