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using-slurm [2016/03/08 08:42] – [Receive mail notifications] joguyausing-slurm [2017/06/07 06:29] – aorth
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 ==== Batch jobs ==== ==== Batch jobs ====
 Request 4 CPUs for a NCBI BLAST+ job in the ''batch'' partition.  Create a file //blast.sbatch//: Request 4 CPUs for a NCBI BLAST+ job in the ''batch'' partition.  Create a file //blast.sbatch//:
-<code>#!/bin/env bash+<code>#!/usr/bin/env bash
 #SBATCH -p batch #SBATCH -p batch
 #SBATCH -J blastn #SBATCH -J blastn
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 # load the blast module # load the blast module
-module load blast/2.2.30++module load blast/2.6.0+
  
 # run the blast with 4 CPU threads (cores) # run the blast with 4 CPU threads (cores)
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 Instead, you can use a local "scratch" folder on the compute nodes to alleviate this burden, for example: Instead, you can use a local "scratch" folder on the compute nodes to alleviate this burden, for example:
  
-<code>#!/bin/env bash+<code>#!/usr/bin/env bash
 #SBATCH -p batch #SBATCH -p batch
 #SBATCH -n 4 #SBATCH -n 4
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka