using-slurm
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Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
using-slurm [2015/05/11 06:33] – joguya | using-slurm [2017/06/07 06:28] – aorth | ||
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==== Batch jobs ==== | ==== Batch jobs ==== | ||
Request 4 CPUs for a NCBI BLAST+ job in the '' | Request 4 CPUs for a NCBI BLAST+ job in the '' | ||
- | < | + | < |
#SBATCH -p batch | #SBATCH -p batch | ||
#SBATCH -J blastn | #SBATCH -J blastn | ||
Line 28: | Line 28: | ||
# load the blast module | # load the blast module | ||
- | module load blast/2.2.30+ | + | module load blast/2.6.0+ |
# run the blast with 4 CPU threads (cores) | # run the blast with 4 CPU threads (cores) | ||
Line 74: | Line 74: | ||
Notification mail types(--mail-type) can be BEGIN, END, FAIL, REQUEUE and ALL(any state change). | Notification mail types(--mail-type) can be BEGIN, END, FAIL, REQUEUE and ALL(any state change). | ||
+ | Example: | ||
+ | < | ||
+ | #SBATCH --mail-user J.Doe@cgiar.org | ||
+ | #SBATCH --mail-type ALL</ | ||
using-slurm.txt · Last modified: 2022/11/03 11:38 by jean-baka